原著論文・査読付き論文
- *, T.Kobayashi, L. Chen, K. Aihara, "Design of
Gnetic Switches wth Only Positive Feedback Loops", The proceedings of
IEEE Computer Society Bioinformatics Conference,(CSBC2002), 2002, pp.
151--162.
e i
- *, T.Kobayashi, L.Chen, K.Aihara,, "Modeling
genetic switches with positive feedback loops", Journal of Theoretical
Biology, April 2003, vol. 221, issue 3, pp. 379 - 399.
- *, T. Kobayashi, K. Aihara, "How Does Noise
Propagate in Genetic Networks? A New Approach to Understand
Stochasticity in Genetic Networks", Proceedings of Congress on
Evolutionary Computation 2003, 2003, Vol. 2, pp. 1018-1025, ISBN:
0780378059.
- R.Tomioka, H.Kimura, T.J.Kobayashi, K. Aihara.,
"Multivariate Analysis of Noise in Genetic Regulatory Networks",
Journal of Theoretical Biology, 2004, Vol.229, No.4, pp. 501-21.
- L. Chen, R. Wang, T. J. Kobayashi, Kazuyuki Aihara, "Dynamics o gene regulatory networks with cell division ycle", Phys. Rev. E, 2004, Vol. 70 (1 Pt 1), 011909.
- Y. Morishita, T. J. Kobayashi, K.
Aihara"Evaluaion of the perfomane of mechanisms for noise attenuaion in
a single-gene expression", Journal of Theoretical Biology, 2005,
235(2), pp. 241-64.
- T.K. Sato, R.G. Yamada, H. Ukai, J.E. Baggs, L.J. Miraglia, T.J. Kobayashi,
D.K. Welsh, S.A. Kay, H.R. Ueda, J.B. Hogenesch, "Feedbackrepression is
required for mammalian circadian cock function.", Nat Genet. 2006,
,38(3), pp. 312-9
- *, Y. Morishita,K. T. J. Kobayashi,
K.Aihara"Optimal Copy numbe of signaling molecules for signal
amplification in linearsignaling cascade", Biophys, J. , 91, 2072?2081,
2006 . 第一著者と同等の寄与
- *, Hideki Ukai, Tetsuya J. Kobayashi, Mamoru Nagano, Koh-hei Masumoto, Mitsugu Sujino, Takao Kondo, Kazuhiro Yagita, Yasufumi Shigeyoshi and Hiroki R. Ueda, "Melanopsin-dependent photo-perturbation reveals desynchronization underlying the singularity of mammalian circadian clocks", Nature Cell Biology,9(11),1327-1334, 2007, 第一著者と同等の寄与
- *, Hirokazu Tozaki, Tetsuya J. Kobayashi,
Hiroyuki Okano, Ryo Yamamoto, Kazuyuki Aihara, Hidenori
Kimura,"Reconstructing the single-ell-level behavior o a toggle switch frm populationlevel measuements", FEBS Journal,582(7), 1067-1072, 2008 . 第一著者と同等の寄与
- *, Hiroyuki Okano, Tetsuya J Kobayashi, Hirokazu Tozaki, and Hidenori Kimura, "Estimation of the source-by-source effect of autorepression on genetic noise", Biophysical Journal, 95, 1063-1074, 2008, 第一著者と同等の寄与
- Yohei M. Koyama, Tetsuya J. Kobayashi, Shuji Tomoda, and Hiroki R. Ueda, "Perturbational formulation of principal component analysis in molecular dynamics simulation", Physical Revew E, 78, 046702, 2008.
- Tetsuya J. Kobayashi, "Implementation of Dynamic Bayesian Decision Making by Intracellular Kinetics", Physical Revew Leters, 104,
228104, 2010.
書籍
- *, 小林徹也・森下喜弘・冨岡亮太・合原一幸"細胞内ネットワークの確率的ゆらぎとその数理的解析", 「＜一分子＞生物学」, 岩波書店, pp.161-180, 2004/ 9/ 29, 合原一幸・岡田康志編
- *, 小林徹也, "異分野融合の舞台としての定量的な生命科学", 「実践ゲノムの最前線」, 六然社, 2009, 井村裕夫編
解説論文
- *,小林徹也, 市瀬夏洋, 合原一幸, "ゲノム・プロテオームダイナミクスの数理", 数理科学, 2001, No. 458, pp. 48-54.
- 市瀬夏洋, 小林徹也, 合原一幸, "遺伝子相互作用系の非線形数理解析", 蛋白質核酸酵素, Vol.46, No.16, pp. 2598-2602.
- 冨岡亮太, 小林徹也, 合原一幸, 木村英紀, "遺伝子発現の揺らぎの確率・ネットワーク解析ロバストな遺伝子ネットワークの設計原理を目指して", 数理科学, 2004, No. 489, pp31-37.
- *, 小林徹也、有田正規、森下喜弘、合原一幸, "細胞内現象のシステム的理解：今理論に何が求められているのか？"、システム／制御／情報、2006, 50(8)，290-296.
- *, 小林徹也、森下喜弘、冨岡亮太、合原一幸, "細胞内ゆらぎの数理"、 システム／制御／情報、2006, 50(8)，297-302
- *, 小林徹也, 粕川 雄也, 上田, "遺伝子発現ダイナミクスの統計則", 数理科学,2007, Vol.526, pp. 70-77
- *, 鵜飼英樹, 山田陸裕、小林徹也, 上田 泰己, "生命システム解析のツールとしての機能ゲノミクス", 実験医学,2007, Vol.25, No. 1, pp. 1670-1675